Posts

Analysis of RNA-seq samples

Sequenced RNA-seq sampled are analyzed for disease identification and RNA-edit checking. Many stacked pipelines are used for this analysis. GATK, the Genome Analysis Toolkit from Broad Institute has a elaborated pipeline for sequence analysis. SPRINT, RNA edit identifying tool has integrated pipeline for sequence analysis. Normally, sequences are first mapped for aligning using several aligning tools, specially found one is BWA (Burrows-Wheeler Aligner). There are several other multi optioned analysis tools like, bcftools, vcftols, bedtools. In found RNA-edit there is also DNA mutations, and these can be filtered using dbSNP.

A Proposition of Mobile Ad hoc Network for Underwater

Abstract: This is a proposition of a wide network in the ocean or sea. This is not particularly an underwater construction but an infrastructure providing a specimen of ad hoc network's application on water. This work actually a work-in-progress. It has not experimentally tested yet. The structure tests the connection and flow-control of water. We will construct several self-organizing, round-shaped network nodes that can float above water. We will construct an internal electricity connection and wireless router for internet connectivity. The electricity of the node can control the flow of water while the nodes operate within themselves to establish the connection. This is a simple proposition and a general overview of how the internet can work over the network. Vehicles may want to connect to the network. For this connection, water-nodes provide a wireless sensor to detect devices. After nodes are connected via network sensors, they use the internet through the water nodes. The n...

Activities and Thoughts

I had been switched to understanding the development of the radius server in March and in June I have been transferred to Wimax, I worked on the Linux essentials up to March 1st. I closed all the doors of software development in March and tried to build skills on hardware/network. Then I also worked on Web development and Agile (frequent reassessment and development plans) tool development. Worked on also database modularity. I am obvious to forget things as I worked in diverse fields. I have also worked on developing several tools and understanding the packaging process until the last five years from 2014-2019. I was in huge mental pressure which forced me to forget many things and subjects by this time. Also, I have day-to-day anxiety with my personal life. I relate to study too frequently. I am forgetting words too frequently as I communicate in Bengali and use English words seldom. I practice very often, as I delve into the understanding system and practicing on my gained theo...

Taking Input other than using JOptionPane

Console console = new Console(System.in); String sInput = console.readLine("Enter Input:"); Scanner scanner = new Scanner(System.in); System.out.println("Enter Input: "); int a  = scanner.nextInt(); String name = scanner.nextLine();

Improved Image Analysis Technique for Embedded System

Image
Abstract: Embedded system design is a challenge especially when devices have limited memory. For these systems, comparing two images is really computationally expensive. Storing the whole image’s information and then compare these two images is a big deal. Although logarithmic algorithm gives us a better and computationally inexpensive technique for matching a small picture in a large scene, we need to match the whole image and for embedded system which uses microcontroller for all computational works it is almost impossible. Because microcontroller has limited number of registers and its size of EEPROM and programmable memory is very small. Our proposal is to match and differentiate two images based on some specific features in a specific position of the object. Clustering algorithm clusters particles, objects in a specific group. To differentiate two objects of a specific group we again need to match two objects wholly. Without matching two objects wholly, we can find out some ...

Importing Java Library

Normally novice programmers import Java Library Files using wildcard operator. For example, if someone wants to use files import all Library Files of Java's IO as, "import java.io.*". It creates pressure on compiler for loading all the library files. It is always suggested to import only the specific library file which is going to be used. Now, this can be used in two way, by using import keyword or by using the whole library location each time. As an example, if I want to use the Buffered Reader as a stream reader I can use as 1. import java.io.BufferedReader; 2. in the program not as a header, as java.io.BufferedReader File = new java.io.BufferedReader(...) So, in these two ways a Library File can be used. I think if first method is used the compiler just need to import the file for the whole running time, but if the second method is used compiler needs to import the library each and every time the program uses the library file. That creates extra load on compiler.

Prime Factorization : SPOJ Problem

/*  * To change this template, choose Tools | Templates  * and open the template in the editor.  */ package prime; /**  *  * @author Tamanna Afroze  */ import java.io.File; import java.io.FileReader; import java.io.FileWriter; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.IOException; import java.util.StringTokenizer; public class Prime {     /**      * @param args the command line arguments      */     boolean haveFactor(int iNumber){         int iFactors[] = new int[10000];         int iIndex = 0;         iFactors[iIndex] = 1;         iIndex++;         iFactors[iIndex] = iNumber;         iIndex++;          ...